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Atom World Is this your site?    
Beautiful space-filling atomic models showing simultaneous polar and covalent bonding. Make any molecule from diamond to DNA; you'll understand chemistry like never before.
http://www.jlc.net/~aretee/atomworld/

Chemist's Art Gallery Is this your site?    
Visualization is a key to understanding how molecules behave and react, and in designing chemicals for particular purposes. The Chemist's Art Gallery contains visualizations and an...
http://www.csc.fi/chem/gallery.phtml

Chemistry Hypermedia Project Is this your site?    
On-line educational hypermedia for general chemistry, analytical chemistry, instrumental analysis, optics, and electronics.
http://www.chem.vt.edu/chem-ed/

Chemistry Visualization Program at NCSA (ChemViz) Is this your site?    
Chemviz is a program which uses the power of the World Wide Web in combination with the power of the SGI supercomputer to generate images of atoms, molecules, and atomic orbitals. ...
http://chemviz.ncsa.uiuc.edu/

ComChem Is this your site?    
A student's site presenting visualizations and animations of organic, inorganic and biochemical molecules.
http://www.comchem.de/

Molecules from Chemistry at Okanagan University College Is this your site?    
1100+ molecular models in .pdb or .mol format.
http://www.ouc.bc.ca/chem/molecule/molecule.html

Organic Chemistry at Centre College Is this your site?    
Tutorials to help organic chemistry students visualize molecules and changes in molecules. Changes covered include conformations and reactions (substitution and elimination).
http://web.centre.edu/muzyka/organic/organic.htm

The IrYdium Project Is this your site?    
Provides a number of simulations (in applet form) as well as other curriculum development tools with the goal of revolutionizing the way chemistry is taught.
http://ir.chem.cmu.edu/irProject/

X-ray Spectra Is this your site?    
Contains x-ray spectra of elements on the periodic table. The spectra are drawn with a java applet.
http://ie.lbl.gov/xray/

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